- Evaluation of the OntoSoft Ontology for Describing Legacy Hydrologic Modeling Software. Bakinam T. Essawy, Jon L. Goodall, Hao Xu, and Yolanda Gil. Environmental Modelling & Software, 92, 2017.
- An introduction to the special issue on Geoscience Papers of the Future. Cédric H. David Yolanda Gil Christopher J. Duffy Scott D. Peckham S. Karan Venayagamoorthy. Earth and Space Science, 3(10), 2016. DOI: 10.1002/2016EA000201
- OntoSoft: A Distributed Semantic Registry for Scientific Software. Yolanda Gil, Daniel Garijo, Saurabh Mishra, and Varun Ratnakar. Proceedings of the Twelfth IEEE Conference on eScience,, Baltimore, MD, 2016.
- Towards the Geoscience Paper of the Future: Best Practices for Documenting and Sharing Research from Data to Software to Provenance. Yolanda Gil, Cédric H. David, Ibrahim Demir, Bakinam T. Essawy, Robinson W. Fulweiler, Jonathan L. Goodall, Leif Karlstrom, Huikyo Lee, Heath J. Mills, Ji‐Hyun Oh, Suzanne A. Pierce, Allen Pope, Mimi W. Tzeng, Sandra R. Villamizar, and Xuan Yu. Earth and Space Science, 3(10), 2016. DOI: 10.1002/2015EA000136
- Cyber-Innovated Watershed Research at the Shale Hills Critical Zone Observatory. Xuan Yu, Chris Duffy, Yolanda Gil, Lorne Leonard, Gopal Bhatt, and Evan Thomas. IEEE Systems Journal, 10(3), 2016.
- DRAT: An Unobtrusive, Scalable Approach to Large Scale Software License Analysis. Chris A. Mattmann, Ji-Hyun Oh, Tyler Palsulich, Lewis John McGibbney, Yolanda Gil, and Varun Ratnakar. Proceedings of the Fourth International Workshop on Software Mining, held in conjunction with the 30th IEEE/ACM International Conference on Automated Software Engineering (ASE), Lincoln, NE, November 2015.
- OntoSoft: Capturing Scientific Software Metadata. Yolanda Gil, Varun Ratnakar, and Daniel Garijo. , Palisades, NY, 2015. Proceedings of the Eighth ACM International Conference on Knowledge Capture (K-CAP), Palisades, NY, October 2015.
- Collaborative Software Development Needs in Geosciences. Yolanda Gil, Eunyoung Moon and James Howison. Proceedings of the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2), held in conjunction with the IEEE ACM International Conference on High Performance Computing (SC), New Orleans, LA, November 2014.
- Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users. Daniel Garijo, Oscar Corcho, Yolanda Gil, Meredith N. Braskie, Derrek Hibar, Xue Hua, Neda Jahanshad and, Paul Thompson and Arthur W. Toga. Proceedings of the IEEE Conference on e-Science, Guarujua, Brazil, October 2014.
- FragFlow: Automated Fragment Detection in Scientific Workflows. Daniel Garijo, Oscar Corcho, Yolanda Gil, Boris A. Gutman, Ivo D. Dinov, Paul Thompson and Arthur W. Toga. Proceedings of the IEEE Conference on e-Science, Guarujua, Brazil, October 2014.
- An Overview of Mobile Applications for Field Science. Anna Zeng, Kevin Zeng, Yolanda Gil, and Matty Mookerjee. GeoSoft Project Report, September 2014.
- The CSDMS Standard Names: Cross-Domain Naming Conventions for Describing Process Models, Data Sets and Their Associated Variables. Scott D. Peckham. Proceedings of the Seventh International Congress on Environmental Modeling and Software, San Diego, CA, June 2014.
- Web Applications that Share Level-12 HUC Data and Models of the CONUS. Lorne Leonard and Chris Duffy. Proceedings of the Seventh International Congress on Environmental Modeling and Software, San Diego, CA, June 2014.
- Intelligent Workflow Systems and Provenance-Aware Software. Yolanda Gil. Proceedings of the Seventh International Congress on Environmental Modeling and Software, San Diego, CA, June 2014.